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Ekyaalo Diagnostics; Johns Hopkins University Partners with Makerere and MUST to Advance AI Innovation for Breast Cancer Diagnosis

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By Joseph Odoi

Globally, Breast cancer remains a serious health challenge, with the World Health Organization (2022) reporting over 2.3 million new cases annually and nearly 670,000 deaths. In Uganda, breast cancer is one of the leading cancers among women, yet the majority of patients are diagnosed at late stages due to delays in accessing diagnostic services, most of which are centralized at the Uganda Cancer Institute (UCI) in Kampala. Since 72% of Uganda’s population lives in rural areas, women often face late diagnosis due to long travel distances. Even after accessing care, results can take 1–6 months due to the slow process of transporting samples to central laboratories. This delay directly impacts the timely start of treatment.

To address this gap, Johns Hopkins University in collaboration with Makerere University and Mbarara University of Science and Technology (MUST), is spearheading innovative solutions that leverage artificial intelligence (AI) and low-cost technologies to improve early diagnosis and treatment.

As part of this collaboration, the Centre for Maternal, Newborn, and Child Health Research at Makerere University School of Public Health led by Associate Professor Peter Waiswa in July hosted a team of graduate biomedical engineers from the Center for Bioengineering Innovation and Design (CBID) at John Hopkins University.

The team is developing a low-cost, AI-powered technology called Ekyaalo Diagnostics, aimed at reducing the turnaround time for breast cancer diagnosis, especially in hard-to-reach areas. As part of their work, they undertook a learning tour at the Ministry of Health, Uganda Cancer Institute, and regional cancer referral centres. The purpose was to map stakeholders in the breast cancer space, gather Ekyaalo diagnostic technology usability feedback, and understand the local innovation ecosystem in breast cancer care.

Ekyaalo Diagnostics and Bringing Pathology Closer to Communities

The flagship innovation, Ekyaalo Diagnostics, is a portable AI-powered whole-slide scanner (WSS) designed to digitize cytology samples at Health Centre IVs and General Hospitals. These digitized images are securely transmitted to pathologists at higher-level facilities for timely review, eliminating the need for physically transporting samples to Kampala.

Ekyaalo Diagnostics hardware: A whole slide scanner and a Laptop displaying a scanned Image.
Ekyaalo Diagnostics hardware: A whole slide scanner and a Laptop displaying a scanned Image.

This technology has the potential to reduce diagnosis delays from several months to just a few days, thereby improving survival outcomes for breast cancer patients.

Building Local Solutions to Global Challenges

In addition to Ekyaalo Diagnostics, Makerere researchers at the Department of Biomedical Engineering are also advancing other innovations such as development of artificial breast prototypes to be used in  educating women on breast cancer symptoms while Research at Mbarara University led by Dr. William Waswa, are developing  PapsAI, a low-cost automated tool that support whole slide scanning of slides for cervical cancer screening.

These initiatives are aligned with the National Cancer Control Plan (NCCP) of the Ministry of Health, which emphasizes prevention, early detection, timely diagnosis.

Design Challenges and Considerations

Despite the progress being made, challenges persist, according to the team’s findings from the tour,these technologies hold great promise however their success in Uganda will depend on addressing some critical barriers.

One of the biggest challenges is limited staffing. Many lower-level health facilities lack trained laboratory personnel to prepare slides. For this reason, new technologies must be designed to be simple, user-friendly, and capable of being adopted after short training sessions.

Another major barrier is equipment maintenance. Past medical innovations in Uganda have often struggled with frequent breakdowns and software failures. The team emphasized that new diagnostic tools must be affordable, durable, and resistant to common system crashes if they are to serve rural health facilities effectively.

Finally, high operational costs continue to undermine sustainability. Some innovations fail because their maintenance costs are too high or because they are incompatible with existing health systems. Ensuring cost-effectiveness and system integration will therefore be vital for the long-term success of breast cancer diagnostic technologies in Uganda.

MORE ABOUT THE PROJECT

The project is led by the Johns Hopkins  Center for Bioengineering Innovation and Design (CBID) in collaboration with Makerere’s Department of Biomedical Engineering and MUST researchers. Field learning tours have already been conducted at Mulago National Referral Hospital, Jinja, Mbarara, and Fort Portal Regional Referral Hospitals, with input from clinicians, technologists, and innovators in Uganda’s health ecosystem.

The Johns Hopkins team has conducted usability interviews with clinicians, laboratory technologists, and surgeons at multiple hospitals including Mulago, Jinja, Mbarara, and Fort Portal. They have also engaged with Uganda’s innovation ecosystem, including makerspaces and industry partners. It has been noted that the Ministry of Health together with Partners working on treatment of cancer has drafted the National Cancer Control Plan (NCCP) that is aimed at reducing incidence, morbidity and mortality through prevention and early treatment and palliative care. The Plan will give guide on health education, early detection, and diagnosis among others Special thanks go to the Center for Bioengineering Innovation and Design   (CIBID) Johns Hopkins University for funding this field learning tour, Centre for Maternal Newborn and Child Health Research at School of Public health (Makerere University) for hosting the team, Departments of Bioengineering at Makerere University and Mbarara University of Science and Technology, Mulago pathology department and the Uganda cancer institute, Regional Referral hospitals of Jinja, Mbarara and Fort Portal among other General hospitals and Health center IVs visited for technical input.

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EU Earmarks Shs19.8bn for 15 Joint PhD Scholarships in Health, Environment Research

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(L-R) Prof. Stella Neema, Dr Herbert Muyinda, Vice Chancellor, Prof. Barnabas Nawangwe, Prof. Lotte Meinert, Prof. Julius Kikooma, and Dr. Godfrey Siu take a photo moment at Makerere Univerity. HEALENAE (Health and Environment in Africa and Europe) project support to doctoral research examining the complex links between environmental change, climate crises and health outcomes, with a strong focus on Africa Europe comparative perspectives, 27th January 2026 Child Health and Development Centre (CHDC), College of Health Sciences (CHS), and Aarhus University meeting with the Vice Chancellor, Main Building, Kampala Uganda, East Africa.

By Violet Nabatanzi & Zaam Ssali

The European Union has earmarked Euros 4,658,684 approximately (Shs19.8 billion) to fully fund 15 PhD scholarships under a new international collaborative research programme that brings together seven universities across Africa and Europe, including Makerere University.

The project, dubbed HEALENAE (Health and Environment in Africa and Europe), will support doctoral research examining the complex links between environmental change, climate crises and health outcomes, with a strong focus on Africa Europe comparative perspectives.

The scholarships are open to anthropologists, social scientists and related humanities scholars who hold an internationally recognised Master’s degree and are interested in pursuing a joint PhD (dual degree).

Dual degrees across continents

Successful candidates will be enrolled at two universities one in Africa and one in Europe and will graduate with a joint or dual PhD degree. The consortium brings together Makerere University, University of Oslo, University of Cape Town, KU Leuven, University of Edinburgh, University of Nairobi, and Aarhus University.

The PhD research areas include:

  • Metabolic impact: agricultural intensification and health transformations
  • Climate change migration and care for the elderly. 
  • Toxic layering in a precarious world: environmental harms and well-being.
  • Livestock and natural resource management: biodiversity and zoonotic diseases.
  • Epidemics, disease and state formation in Africa.
  • Climate crisis, youth migration, adaption and associated health outcomes.
  • Toxicity: urban living in landscapes of extraction.
  • Gendered cancer epidemics and questions about environments
  • Infrastructures of toxic evidence and civic protection
  • Biosecurity: food, health risks and animal disease.
  • Non Communicable Diseases, environments and questions of repair.
  • Urban commons: environments, infrastructures, and health.
  • Youth mental health and gambling epidemics in times of environmental crisis.
  • Epidemics and natural disasters as ‘business’.
  • The Frontiers of Vector Borne Disease: Expertise and Response in Africa and Europe.

Dr. Godfrey Siu, the University’s Senior Lecturer and Director of the Child Health and Development Centre (CHDC); Dr. Herbert Muyinda, Senior Lecturer; Prof. Stella Neema from the Department of Sociology and Anthropology; alongside Prof. Lotte Meinert of Aarhus University will jointly supervise the students, together with other PhD supervisors from other collaborating Universities.

On Tuesday, January 27, Prof. Julius Kikooma, Director of the Directorate of Graduate Training at Makerere University, Dr Siu, Dr Muyinda, and Prof.  Neema alongside Prof. Lotte paid a courtesy visit to the University’s Vice Chancellor, Prof. Barnabas Nawangwe.

Prof. Nawangwe welcomed the funding and commended the EU for its support, noting that the generous contribution reflects the confidence the EU has in Makerere University. He added that the University is working hard to address the loophole previously raised by the EU regarding the implementation of EU-funded grants. The Vice Chancellor congratulated the team and pledged the University’s full support to ensure the project’s successful implementation.

Who should apply

Speaking in an interview, Prof. Lotte said the program is particularly suited for candidates with strong grounding in anthropology, sociology and related social sciences.

Eligible candidates must have an internationally recognised Master’s degree in anthropology or related social sciences and humanities disciplines.

Lotte added that the positions are fully funded for three years, with generous support for fieldwork, coursework, conferences, writing retreats and research training.

Candidates are expected to conduct up to 12 months of fieldwork. They will be enrolled at both universities and are required to spend at least one semester at the partner institution.

A first for Uganda

According to Dr Siu, the HEALENAE model where fifteen joint PhDs are funded under one programme is the first of its kind in Uganda.

Addressing concerns about differing academic expectations across universities, Dr Siu said these are anticipated and manageable.

“While there are some differences, PhD training globally follows a similar structure. For instance, Makerere requires all PhD students to complete mandatory cross-cutting courses, including philosophy of methods, advanced research methods, and scholarly writing and communication skills,” he said.

In addition, students will attend writing retreats and specialised training schools, some of which will be hosted at Makerere University and the University of Nairobi, aimed at sharpening their research and analytical skills.

Prof. Kikooma briefed the team on the structure of the PhD program at Makerere University and provided guidance on how to align the dual program with the University’s framework.

He also pledged his support and expressed optimism that the program offers new opportunities for Makerere University to learn from and strengthen dual programs. The initiative aligns with Makerere’s vision of becoming a research-led university through intensified PhD training.

Application deadline

Interested candidates are encouraged to visit the HEALENAE website for detailed calls and application guidelines.  The deadline for applications is March 1, 2026.

The application link is provided below.

https://phd.arts.au.dk/applicants/open-and-specific-calls/healenae-project-2

For further information contact: godfrey.siu@mak.ac.ug

Zaam Ssali
Zaam Ssali

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Call For Applications: MakNCD Masters and PhD Training Opportunities

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An aerial photo of the College of Health Sciences (CHS), Makerere University showing Left to Right: The Sir Albert Cook Memorial Library, School of Biomedical Sciences, Davies Lecture Theatre, School of Public Health, Mulago Specialised Women and Neonatal Hospital (MSWNH)-Background Left and Nakasero Hill-Background Right, Kampala Uganda, East Africa.

The Makerere University Non-Communicable Disease (MAK-NCD) Research Training Program is a research capacity building program based at Makerere University College of Health Sciences with collaboration at John Hopkins University and funded by the United States National Institute of Health-Fogarty International Centre (D43TW011401). The overall goal of this training program is to develop a comprehensive mentored research-training program in Uganda that will build local capacity to address the challenges of NCD control and management and promote the use of research findings to inform decision-making and policy.

PhD Fellowship

The PhD fellowship support is for up to three (3) years (full-time), subject to annual performance reviews and progress milestones. Successful scholars will be registered at Makerere University and may undertake sponsored didactic research methods training at the Johns Hopkins University (JHU), USA, to receive additional skills development and mentorship in NCD research. This call is targeting mainly junior researchers with interest in building an independent research career in noncommunicable diseases research with focus on Epidemiology, Data Science and Implementation Science research to strengthen evidence-based interventions, policy and control in Uganda.

Masters Fellowship

MakNCD is pleased to invite applications for Master’s level training in the following disciplines: Master of Public Health (MPH), Master of Business Administration (MBA), Master of Public Health monitoring and Evaluation. These training opportunities are intended to build a critical mass of professionals equipped with research, leadership, health systems, and management skills relevant to addressing the growing burden of NCDs in low- and middle-income countries.

Application Deadline: 23rd February 2025; Only shortlisted candidates will be contacted.

See below for detailed adverts

Zaam Ssali
Zaam Ssali

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Course Announcement: Certificate in Water, Sanitation and Hygiene (CWASH) – 2026

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Graduands of the 2025 Certificate Course in Water, Sanitation and Hygiene (CWASH) pose for a group photo at the Makerere University School of Public Health, following the successful completion of the short course in July 2025. Makerere University School of Public Health, Mulago Hospital Complex, Kampala Uganda, East Africa.

Makerere University School of Public Health (MakSPH) is pleased to announce the Certificate Course in Water, Sanitation and Hygiene (CWASH) – 2026.

This intensive and practical short course is designed to strengthen the knowledge, skills, and attitudes of professionals involved in the planning, implementation, and management of Water, Sanitation and Hygiene (WASH) services. The programme responds to the growing demand for competent WASH practitioners in local government, non-governmental organisations, and the private sector.

Course Highlights

  • Duration: 8 weeks (01 June – 24 July 2026)
  • Mode: Day programme (classroom-based learning and field attachment)
  • Fees:
    • UGX 900,000 (Ugandans / East African Community)
    • USD 500 (International participants)
  • Application deadline: Friday, 27 March 2026

Who Should Apply?

  • Practising officers in the WASH sector
  • Environmental Health workers seeking Continuous Professional Development (CPD)
  • Applicants with at least UACE (or equivalent) and one year of WASH-related work experience

More Information

Additional details on course structure, modules, and delivery are available at: https://sph.mak.ac.ug/academics/water-sanitation-and-hygiene-wash

Important Note for Applicants

Attached to this announcement, interested persons will find:

  1. The course flier, providing comprehensive programme details, and
  2. The application form, which should be completed and returned to MakSPH together with the required supporting documents.

For full course details, application procedures, and contact information, please carefully review the attached documents. Eligible and interested applicants are strongly encouraged to apply before the deadline and take advantage of this opportunity to build practical competence in WASH service delivery.

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