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Dr. Nanyeenya Nicholus Hopes to Guide Uganda’s HIV Response with Research

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Clad in a coral red and black with green panels sewed into the front facings doctorate gown with emblems and ivory tower icons, Dr. Nicholus Nanyeenya can’t help, but, smile broadly as he fastens the long oblong sleeves. At last, his journey has come to an end, and he now holds a PhD. The vibrant colours form an indelible embroidery, weaving together the distinctive identity and essence of Makerere University.

A medical doctor by training, he has not only achieved a milestone but has emerged as a leader in the fight against HIV/AIDS in Uganda. He is part of the 132 PhD graduands in the week-long #Mak74thGrad, which begins on Monday, January 29, 2024.

Dr. Nanyeenya, popular in the corridors of Makerere University School of Public Health, as, ‘His Excellency,’ having served as a PhD Forum president studied; “Viral Non-Suppression, Perceptions and Effectiveness of Intensive Adherence Counselling among People Living with HIV/AIDS on Antiretroviral Therapy with Low-Level Viraemia in Uganda.”

Dr. Nicholus Nanyeenya presents during his PhD Defense on Thursday, December 7, 2023. College of Health Sciences, Makerere University, Kampala Uganda, East Africa.
Dr. Nicholus Nanyeenya presents during his PhD Defense on Thursday, December 7, 2023.

From MD to PhD

Dr. Nanyeenya’s passion for research began with a Master’s in Public Health (MPH) at the University of Aberdeen, UK back in 2018. Witnessing the critical role research played in health system decisions, he set his sights on a PhD at Makerere University, determined to impact HIV/AIDS policies in Uganda.

“I realized the importance of research in informing policy decisions in health systems strengthening and disease control. I noticed that at times, wrong implementation strategies were done in implementing HIV programs due to inadequate research skills, and this motivated me to start my PhD.

My goal was to generate information about HIV low-level viraemia to guide the review of the HIV guidelines in Uganda. In my PhD, I aimed to enhance my research, writing, and communication skills, to enable me to become an independent researcher and global health leader in HIV research and program implementation,” says Dr. Nanyeenya.

"By virtue of the authority entrusted in me, I confer up on you a degree of Doctor of Philosophy of Makerere University," these were exactly the words by the Chancellor as he conferred a PhD to Dr. Nicholas Nanyeeya. 74th Graduation Ceremony, Day 1, 29th January 2024, School of Public Health, College of Health Sciences (CHS), Freedom Square, Makerere University, Kampala Uganda, East Africa.
“By virtue of the authority entrusted in me, I confer up on you a degree of Doctor of Philosophy of Makerere University,” these were exactly the words by the Chancellor as he conferred a PhD to Dr. Nicholas Nanyeeya.

Previously in Uganda, individuals with a viral load (VL) below 1,000 copies/ml were considered to have effectively suppressed the virus, commended for antiretroviral adherence, and encouraged to continue treatment.

However, studies elsewhere identified a significant risk for those with low-level viraemia (≥50 to <1,000 copies/ml), including the potential for HIV drug resistance and transmission to partners, especially in discordant couples.

Despite an increase from 11 percent to 35 percent in Uganda between 2017 and 2020, using a 1,000 copies/ml threshold, no interventions were implemented to address this concerning trend.

It is this situation that motivated Dr. Nanyeenya to undertake a PhD research, to generate more information to address low-level viraemia in Uganda.

Dr. Nicholus Nanyeenya at a PhD Colloquium at MakSPH in 2022. College of Health Sciences, Makerere University, Kampala Uganda, East Africa.
Dr. Nicholus Nanyeenya at a PhD Colloquium at MakSPH in 2022.

Low-Level Viraemia in HIV Patients

His study revealed a surge in individuals with low-level viraemia (LLV), posing risks of drug resistance and transmission. This alarming trend prompted a swift response, influencing the revision of Uganda’s HIV guidelines.

“From my PhD research, the number of People Living with HIV (PLHIV) with LLV in Uganda increased from 2.0% in 2016 to 8.6% in 2020. LLV was associated with being male, second line regimen and being below 18 years of age. Relative to clients with a non-detectable viral load, PLHIV with LLV had 4.1 times higher risk of developing viral non-suppression, as compared to PLHIV with a non-detectable viral load (adjusted hazard ratio was 4.1, 95% CI: 3.7 to 4.7, p < 0.001),” he notes.

According to Dr. Nanyeenya, most people living with HIV were not aware of low-level viraemia, leading to a limited understanding of its associated risks. He adds that, healthcare workers providing HIV care exhibited insufficient knowledge about LLV, resulting in a lack of formal adherence counselling for LLV management.

In the intervention study, intensive adherence counselling (IAC) demonstrated a significant impact, with the intervention arm achieving a nearly twofold increase in attaining a non-detectable viral load status of 57.4 percent compared to the non-intervention arm which was at 29.9 percent.

His findings prompted a significant policy shift, lowering the viral suppression threshold. The Ministry of Health has also implemented IAC for those with 50 to <1,000 copies/ml.

“As already highlighted, these findings have already partly guided the review of the HIV guidelines in Uganda, changing the viral load suppression threshold for plasma and dried blood spot samples respectively. Ministry of Health in Uganda has also instituted IAC as intervention to manage people living with HIV having at least 50 but less than 1,000 copies/ml,” comfortably says.

Dr. Nanyeenya with MakSPH Faculty (L-R) Dr. Esther Buregyeya, Head, Disease Control and Environmental Health Department, Dr. Christine Nalwadda, Head, Community Health and Behavioral Sciences Department and Professor Christopher Garimoi Orach. 74th Graduation Ceremony, Day 1, 29th January 2024, School of Public Health, College of Health Sciences (CHS), Freedom Square, Makerere University, Kampala Uganda, East Africa.
Dr. Nanyeenya with MakSPH Faculty (L-R) Dr. Esther Buregyeya, Head, Disease Control and Environmental Health Department, Dr. Christine Nalwadda, Head, Community Health and Behavioral Sciences Department and Professor Christopher Garimoi Orach.

Mentorship

In his PhD journey, Dr. Nanyeenya found strength in mentorship, both from his distinguished supervisors and fellow PhD colleagues. He benefited from a multi-disciplinary team of four dedicated supervisors (Prof. Fredrick Makumbi, Prof. Noah Kiwanuka, Prof. Nakanjako Damalie, and Dr. Gertrude Nakigozi) who, armed with extensive expertise in his research field, guided him through various aspects of doctoral research. He also received valuable mentorship from Dr. Simon Peter Kibira, Dr. Susan Nabadda, Prof. Larry Chang, Dr. Kigozi Godfrey, Dr. Siu Godfrey, Dr. Fred Nalugoda, Prof. Anne Katahoire, and others.

“The most impactful aspect of my PhD journey was the land marking mentorship. This mentorship was both from my mentors who comprised of my supervisors and other experienced researchers from the field of HIV research. Peer mentorship from my fellow colleagues in the PhD Forum was also very key in enabling me to handle the entire PhD process,” he says.

The department’s head, Dr. Joan Mutyoba, also played a fundamental role, ensuring every detail of the journey was attended to.

“Dr. Joan Mutyoba, who would literally follow up on every single detail to ensure that we get the necessary assistance to progress. However, I should confess that there was still many moments of crying and distress in the three years journey, however through prayer and consultative meetings with the supervisors, fellow PhD colleagues and the head of department, most of these were overcame and that is why, I am graduating,” Dr. Nanyeenya.

Dr. Nicholus Nanyeenya with Dr. Juliet Babirye during a PhD Colloquium at MakSPH in 2022. College of Health Sciences, Makerere University, Kampala Uganda, East Africa.
Dr. Nicholus Nanyeenya with Dr. Juliet Babirye during a PhD Colloquium at MakSPH in 2022.

Completing a PhD in a record less than 3 years

Completing his PhD in less than three years, Dr. Nanyeenya emphasizes the importance of swift action. He advises aspiring PhD candidates to persevere through challenges, knowing that the victory is worth the effort. His mantra is clear: “Once you make up your mind to start a PhD, fast track it and complete it!”

Choosing a field for a Ph.D. that aligns with one’s understanding and prior work experience is crucial. “My decision to pursue a Ph.D. in HIV low-level viraemia, a field linked to HIV viral load testing, aligns with my professional background. As an international consultant strengthening HIV systems and a programs officer at CPHL, I’ve accumulated extensive experience in this area. This expertise proved invaluable in overcoming challenges related to my research topic during my Ph.D. studies,” he says.

Dr. Nicholus Nanyeenya cuts cake shortly after his PhD Defense on Thursday, December 7, 2023. College of Health Sciences, Makerere University, Kampala Uganda, East Africa.
Dr. Nicholus Nanyeenya cuts cake shortly after his PhD Defense on Thursday, December 7, 2023.

Looking ahead, Dr. Nanyeenya envisions becoming a global health leader, implementing evidence-based interventions to combat diseases in Uganda and beyond. His message echoes a profound truth: to control HIV and uplift Uganda, “We must love our country and fellow Ugandans.”

“I have worked as a consultant on health systems strengthening. This role has given me the opportunity to work with diverse communities in various developing countries, where I have witnessed many health challenges, characterized by many diseases of poverty and high mortality rates from rather preventable causes. My experience in the developed world has exposed me to the benefits of evidence-based interventions in promoting health and controlling diseases,” he says.

Dr. Nanyeenya Nicholus is not just graduating; he’s setting a course for a healthier, more resilient Uganda. His dedication to research, mentorship, and swift action exemplifies the transformative power of one individual committed to making a difference.

The study was funded by Rakai Health Service Program PhD Fogarty Training Scholarship, UJMT Fogarty Global Health Fellowship and Mak-BSSR program, and Makerere University Research and Innovation Fund (MakRIF).

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Davidson Ndyabahika

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EU Earmarks Shs19.8bn for 15 Joint PhD Scholarships in Health, Environment Research

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(L-R) Prof. Stella Neema, Dr Herbert Muyinda, Vice Chancellor, Prof. Barnabas Nawangwe, Prof. Lotte Meinert, Prof. Julius Kikooma, and Dr. Godfrey Siu take a photo moment at Makerere Univerity. HEALENAE (Health and Environment in Africa and Europe) project support to doctoral research examining the complex links between environmental change, climate crises and health outcomes, with a strong focus on Africa Europe comparative perspectives, 27th January 2026 Child Health and Development Centre (CHDC), College of Health Sciences (CHS), and Aarhus University meeting with the Vice Chancellor, Main Building, Kampala Uganda, East Africa.

By Violet Nabatanzi & Zaam Ssali

The European Union has earmarked Euros 4,658,684 approximately (Shs19.8 billion) to fully fund 15 PhD scholarships under a new international collaborative research programme that brings together seven universities across Africa and Europe, including Makerere University.

The project, dubbed HEALENAE (Health and Environment in Africa and Europe), will support doctoral research examining the complex links between environmental change, climate crises and health outcomes, with a strong focus on Africa Europe comparative perspectives.

The scholarships are open to anthropologists, social scientists and related humanities scholars who hold an internationally recognised Master’s degree and are interested in pursuing a joint PhD (dual degree).

Dual degrees across continents

Successful candidates will be enrolled at two universities one in Africa and one in Europe and will graduate with a joint or dual PhD degree. The consortium brings together Makerere University, University of Oslo, University of Cape Town, KU Leuven, University of Edinburgh, University of Nairobi, and Aarhus University.

The PhD research areas include:

  • Metabolic impact: agricultural intensification and health transformations
  • Climate change migration and care for the elderly. 
  • Toxic layering in a precarious world: environmental harms and well-being.
  • Livestock and natural resource management: biodiversity and zoonotic diseases.
  • Epidemics, disease and state formation in Africa.
  • Climate crisis, youth migration, adaption and associated health outcomes.
  • Toxicity: urban living in landscapes of extraction.
  • Gendered cancer epidemics and questions about environments
  • Infrastructures of toxic evidence and civic protection
  • Biosecurity: food, health risks and animal disease.
  • Non Communicable Diseases, environments and questions of repair.
  • Urban commons: environments, infrastructures, and health.
  • Youth mental health and gambling epidemics in times of environmental crisis.
  • Epidemics and natural disasters as ‘business’.
  • The Frontiers of Vector Borne Disease: Expertise and Response in Africa and Europe.

Dr. Godfrey Siu, the University’s Senior Lecturer and Director of the Child Health and Development Centre (CHDC); Dr. Herbert Muyinda, Senior Lecturer; Prof. Stella Neema from the Department of Sociology and Anthropology; alongside Prof. Lotte Meinert of Aarhus University will jointly supervise the students, together with other PhD supervisors from other collaborating Universities.

On Tuesday, January 27, Prof. Julius Kikooma, Director of the Directorate of Graduate Training at Makerere University, Dr Siu, Dr Muyinda, and Prof.  Neema alongside Prof. Lotte paid a courtesy visit to the University’s Vice Chancellor, Prof. Barnabas Nawangwe.

Prof. Nawangwe welcomed the funding and commended the EU for its support, noting that the generous contribution reflects the confidence the EU has in Makerere University. He added that the University is working hard to address the loophole previously raised by the EU regarding the implementation of EU-funded grants. The Vice Chancellor congratulated the team and pledged the University’s full support to ensure the project’s successful implementation.

Who should apply

Speaking in an interview, Prof. Lotte said the program is particularly suited for candidates with strong grounding in anthropology, sociology and related social sciences.

Eligible candidates must have an internationally recognised Master’s degree in anthropology or related social sciences and humanities disciplines.

Lotte added that the positions are fully funded for three years, with generous support for fieldwork, coursework, conferences, writing retreats and research training.

Candidates are expected to conduct up to 12 months of fieldwork. They will be enrolled at both universities and are required to spend at least one semester at the partner institution.

A first for Uganda

According to Dr Siu, the HEALENAE model where fifteen joint PhDs are funded under one programme is the first of its kind in Uganda.

Addressing concerns about differing academic expectations across universities, Dr Siu said these are anticipated and manageable.

“While there are some differences, PhD training globally follows a similar structure. For instance, Makerere requires all PhD students to complete mandatory cross-cutting courses, including philosophy of methods, advanced research methods, and scholarly writing and communication skills,” he said.

In addition, students will attend writing retreats and specialised training schools, some of which will be hosted at Makerere University and the University of Nairobi, aimed at sharpening their research and analytical skills.

Prof. Kikooma briefed the team on the structure of the PhD program at Makerere University and provided guidance on how to align the dual program with the University’s framework.

He also pledged his support and expressed optimism that the program offers new opportunities for Makerere University to learn from and strengthen dual programs. The initiative aligns with Makerere’s vision of becoming a research-led university through intensified PhD training.

Application deadline

Interested candidates are encouraged to visit the HEALENAE website for detailed calls and application guidelines.  The deadline for applications is March 1, 2026.

The application link is provided below.

https://phd.arts.au.dk/applicants/open-and-specific-calls/healenae-project-2

For further information contact: godfrey.siu@mak.ac.ug

Zaam Ssali
Zaam Ssali

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Call For Applications: MakNCD Masters and PhD Training Opportunities

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An aerial photo of the College of Health Sciences (CHS), Makerere University showing Left to Right: The Sir Albert Cook Memorial Library, School of Biomedical Sciences, Davies Lecture Theatre, School of Public Health, Mulago Specialised Women and Neonatal Hospital (MSWNH)-Background Left and Nakasero Hill-Background Right, Kampala Uganda, East Africa.

The Makerere University Non-Communicable Disease (MAK-NCD) Research Training Program is a research capacity building program based at Makerere University College of Health Sciences with collaboration at John Hopkins University and funded by the United States National Institute of Health-Fogarty International Centre (D43TW011401). The overall goal of this training program is to develop a comprehensive mentored research-training program in Uganda that will build local capacity to address the challenges of NCD control and management and promote the use of research findings to inform decision-making and policy.

PhD Fellowship

The PhD fellowship support is for up to three (3) years (full-time), subject to annual performance reviews and progress milestones. Successful scholars will be registered at Makerere University and may undertake sponsored didactic research methods training at the Johns Hopkins University (JHU), USA, to receive additional skills development and mentorship in NCD research. This call is targeting mainly junior researchers with interest in building an independent research career in noncommunicable diseases research with focus on Epidemiology, Data Science and Implementation Science research to strengthen evidence-based interventions, policy and control in Uganda.

Masters Fellowship

MakNCD is pleased to invite applications for Master’s level training in the following disciplines: Master of Public Health (MPH), Master of Business Administration (MBA), Master of Public Health monitoring and Evaluation. These training opportunities are intended to build a critical mass of professionals equipped with research, leadership, health systems, and management skills relevant to addressing the growing burden of NCDs in low- and middle-income countries.

Application Deadline: 23rd February 2025; Only shortlisted candidates will be contacted.

See below for detailed adverts

Zaam Ssali
Zaam Ssali

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Course Announcement: Certificate in Water, Sanitation and Hygiene (CWASH) – 2026

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Graduands of the 2025 Certificate Course in Water, Sanitation and Hygiene (CWASH) pose for a group photo at the Makerere University School of Public Health, following the successful completion of the short course in July 2025. Makerere University School of Public Health, Mulago Hospital Complex, Kampala Uganda, East Africa.

Makerere University School of Public Health (MakSPH) is pleased to announce the Certificate Course in Water, Sanitation and Hygiene (CWASH) – 2026.

This intensive and practical short course is designed to strengthen the knowledge, skills, and attitudes of professionals involved in the planning, implementation, and management of Water, Sanitation and Hygiene (WASH) services. The programme responds to the growing demand for competent WASH practitioners in local government, non-governmental organisations, and the private sector.

Course Highlights

  • Duration: 8 weeks (01 June – 24 July 2026)
  • Mode: Day programme (classroom-based learning and field attachment)
  • Fees:
    • UGX 900,000 (Ugandans / East African Community)
    • USD 500 (International participants)
  • Application deadline: Friday, 27 March 2026

Who Should Apply?

  • Practising officers in the WASH sector
  • Environmental Health workers seeking Continuous Professional Development (CPD)
  • Applicants with at least UACE (or equivalent) and one year of WASH-related work experience

More Information

Additional details on course structure, modules, and delivery are available at: https://sph.mak.ac.ug/academics/water-sanitation-and-hygiene-wash

Important Note for Applicants

Attached to this announcement, interested persons will find:

  1. The course flier, providing comprehensive programme details, and
  2. The application form, which should be completed and returned to MakSPH together with the required supporting documents.

For full course details, application procedures, and contact information, please carefully review the attached documents. Eligible and interested applicants are strongly encouraged to apply before the deadline and take advantage of this opportunity to build practical competence in WASH service delivery.

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