Research
Publications Arising Directly from THRiVE-2 Funding in 2021
Published
4 years agoon

- Milugo TK, Tchouassi DP, Kavishe RA, Dinglasan RR, Torto B. Root exudate chemical cues of an invasive plant modulate oviposition behavior and survivorship of a malaria mosquito vector. Sci Rep. 2021 Jul 20;11(1):14785. https://doi.org/10.1038/s41598-021-94043-5.PMID: 34285252
- Kaaya, R.D., Kajeguka, D.C., Matowo, J.J, Ndaro A.J., Mosha FW, Chilongola J. O. and Kavishe R. A. Predictive markers of transmission in areas with different malaria endemicity in north-eastern Tanzania based on seroprevalence of antibodies against Plasmodium falciparum. BMC Res Notes 14, 404 (2021).
doi: 10.1186/s13104-021-05818-y - Mosha MV, Msuya SE, Kasagama E, Ayieko P, Todd J, Filteau S.PLoS One. Prevalence and correlates of overweight and obesity among primary school children in Kilimanjaro, Tanzania. 2021 Apr 22;16(4):e0249595. doi: 10.1371/journal.pone.0249595. eCollection 2021.PMID: 33886578
- Mosha MV, Kasagama E, Ayieko P, Todd J, Msuya SE, Grosskurth H, Filteau S. Description and comparison of physical activity from self-reports and accelerometry among primary school children in Kilimanjaro, Tanzania: a pilot study. AAS Open Res. 2021 May 17;3:40. doi: 10.12688/aasopenres.13118.4.eCollection 2020.PMID: 34056542
- Mcharo RD, Mayaud P, Msuya SE. Where and how do young people like to get their sexual and reproductive health (SRH) information? Experiences from students in higher learning institutions in Mbeya, Tanzania: a cross-sectional study. BMC Public Health. 2021 Sep 16;21(1):1683. doi: 10.1186/s12889-021-11728-2.PMID: 34530796
- Okello E, Ndagire E, Muhamed B, Sarnacki R, Murali M, Pulle J, Atala J, Bowen AC, DiFazio MP, Nakitto MG, Harik NS, Kansiime R, Longenecker CT, Lwabi P, Agaba C, Norton SA, Omara IO, Oyella LM, Parks T, Rwebembera J, Spurney CF, Stein E, Tochen L, Watkins D, Zimmerman M, Carapetis JR, Sable CA, Beaton A. Incidence of acute rheumatic fever in northern and western Uganda: a prospective, population-based study. Lancet Glob Health. 2021 Oct;9(10):e1423-e1430. doi: 10.1016/S2214-109X (21)00288-6. Epub 2021 Aug 19. PMID: 34419237
- Beaton A, Okello E, Rwebembera J, Grobler A, Engelman D, Alepere J, Canales L, Carapetis J, DeWyer A, Lwabi P, Mirabel M, Mocumbi AO, Murali M, Nakitto M, Ndagire E, Nunes M, Omara IO, Sarnacki R, Scheel A, Wilson N, Zimmerman M, Zühlke L, Karthikeyan G, Sable CA, Steer AC. Secondary Antibiotic Prophylaxis for Latent Rheumatic Heart Disease. Accepted, NEJM, 8/24/21.
- Arthur Kwizera, David P Kateete, Ronald Ssenyonga, Lydia Nakiyingi, Jane Nakibuuka, Christine Namata, Arthur Mwanje, Emmy Okello, Daphne Kabatoro, Noah Kiwanuka, Robert C Bollinger, James Tumwine, Charlotte Summers. Acute Respiratory Distress Syndrome in an African Intensive Care Unit Setting: A Prospective Study of Prevalence and Outcomes. Ann Am Thorac Soc 2021 Oct 19. doi: 10.1513/ AnnalsATS.202103-270RL.
- Christine Oryema, Karlmax Rutaro, Sam William Oyet and Geoffrey Maxwell Malinga. Ethnobotanical plants used in the management of symptoms of tuberculosis in rural Uganda Tropical Medicine and Health (2021) 49:92 https://doi.org/10.1186/s41182-021-00384-2
- Mulugeta Belay, Begna Tulu, Sidra Younis, David A Jolliffe, Dawit Tayachew, Hana Manwandu, Tenagnework Abozen, Emawayish A Tirfie, Metasebia Tegegn, Aboma Zewude, Sally Forrest, Jonathan Mayito, Jim F Huggett, Gerwyn M Jones, Denise M O’Sullivan, Henny M Martineau, Mahdad Noursadeghi, Aneesh Chandran, Kathryn A Harris, Vlad Nikolayevskyy, Julie Demaret, Stefan Berg, Martin Vordermeier, Taye T Balcha, Abraham Aseffa, Gobena Ameni, Markos Abebe, Stephen T Reece, Adrian R Martineau. Detection of Mycobacterium tuberculosis complex DNA in CD34-positive peripheral blood mononuclear cells of asymptomatic tuberculosis contacts: an observational study. The Lancet Microbe, 2021 Jun. 2(6): p. E267-E275.
- Mosha MV, Kasagama E, Ayieko P, Todd J, Msuya SE, Grosskurth H Fulteau S.. Description and comparison of physical activity from self-reports and accelerometry among primary school children in Kilimanjaro, Tanzania: a pilot study [version 4; peer review: 2 approved]. AAS Open Res 2021, 3:40 (https://doi.org/10.12688/aasopenres.13118.4)
- Philemon RN , Mmbaga BT , Bartlett J, Renju J, Mtuy T, Mboya IB , Msuya SE. Do Women Enrolled in PMTCT Understand the Recommendations: A Case Study from Kilimanjaro 16 June 2021 Volume 2021:15 Pages 1301—1309 DOI https://doi.org/10.2147/PPA.S307847
- Okello E, Ndagire E, Muhamed B, Sarnacki R, Murali M, Pulle J, Atala J, Bowen AC, DiFazio MP, Nakitto MG, Harik NS, Kansiime R, Longenecker CT, Lwabi P, Agaba C, Norton SA, Omara IO, Oyella LM, Parks T, Rwebembera J, Spurney CF, Stein E, Tochen L, Watkins D, Zimmerman M, Carapetis JR, Sable CA, Beaton A. Incidence of acute rheumatic fever in northern and western Uganda: a prospective, population-based study. Lancet Glob Health. 2021 Oct;9(10):e1423-e1430. doi: 10.1016/S2214-109X(21)00288-6. Epub 2021 Aug 19. PMID: 34419237
- Joel L. Bargul, Kevin O. Kidambasi, Merid N. Getahun, Jandouwe Villinger, Robert S. Copeland, Jackson M. Muema, Mark Carrington, Daniel K. Masiga. Transmission of ‘Candidatus Anaplasma camelii’ to mice and rabbits by camelspecific keds, Hippobosca camelina. PLoS Negl Trop Dis 15(8): e0009671. https://doi.org/10.1371/journal.pntd.0009671
- Hudson Onen, Robinson Odong, Moses Chemurot, Frédéric Tripet and Jonathan K. Kayondo Predatory and competitive interaction in Anopheles gambiae sensu lato larval breeding habitats in selected villages of central Uganda. Parasites Vectors (2021) 14:420 https://doi.org/10.1186/s13071-021-04926-9
- Dinah Amongin, Frank Kaharuza, Claudia Hanson, Annettee Nakimuli, Susan Mutesi, Lenka Benova and Lynn Atuyambe. “… I would have left that man long time ago but, …” exploring circumstances of and motivators for repeat adolescent birth in Eastern Uganda. Archives of Public Health (2021) 79:142
https://doi.org/10.1186/s13690-021-00662-9 - TK. Milugo, D P. Tchouassi, RA. Kavishe, RR. Dinglasan & B. Torto. Root exudate chemical cues of an invasive plant modulate oviposition behavior and survivorship of a malaria mosquito vector Nature Portfolio Scientific Reports | (2021) 11:14785 | https://doi.org/10.1038/s41598-021-94043-5
- Getange, D.; Bargul, J.L.; Kanduma, E.; Collins, M.; Bodha, B.; Denge, D.; Chiuya, T.; Githaka, N.; Younan, M.; Fèvre, E.M.; et al. Ticks and Tick-Borne Pathogens Associated with Dromedary Camels (Camelus dromedarius) in Northern Kenya. Microorganisms 2021, 9, 1414. https://doi.org/10.3390/microorganisms9071414
- Dacal E, Bermejo-Peláez D, Lin L, Álamo E, Cuadrado D, Martínez Á, Mousa A, Postigo M, Soto A, Sukosd E, Vladimirov A, Mwandawiro C, Gichuki P, Williams NA, Muñoz J, Kepha S, Luengo-Oroz M. Mobile microscopy and telemedicine platform assisted by deep learning for the quantification of Trichuris trichiura infection. PLoS Negl Trop Dis. 2021 Sep 7;15(9):e0009677. doi: 10.1371/journal.pntd.0009677. PMID: 34492039; PMCID: PMC8448303
- JM Muema, JL Bargul, JM Mutunga, MA. Obonyo, GO. Asudi, SN Njeru. Pesticide Biochemistry and Physiology, Neurotoxic Zanthoxylum chalybeum root constituents invoke mosquito larval growth retardation through ecdysteroidogenic CYP450s transcriptional perturbations https://doi.org/10.1016/j.pestbp.2021.104912
- Nakanjako D, Kendall D, Sewankambo NK, Razak M H, Oduor B, Odero T, Garcia P, Farquhar C. Building and Sustaining Effective Partnerships for Training the Next Generation of Global Health Leaders. Annals of Global Health. 2021; 87(1): 66, 1–9. DOI: https://doi.org/10.5334/aogh.3214
- Mosha MV, Msuya SE, Kasagama E, Ayieko P, Todd J, Filteau S (2021) Prevalence and correlates of overweight and obesity among primary school children in Kilimanjaro, Tanzania. PLoS ONE 16(4): e0249595. https://doi.org/10.1371/journal.pone.0249595
- Tushabe P, Howard W, Bwogi J, Birungi M, Eliku JP, Kakooza P, Bukenya H, Namuwulya P, Gaizi J, Tibanagwa M, Kabaliisa T, Mulindwa J, Muhanguzi D, Suchard M, Gumede N, Bakamutumaho B.J. Molecular characterization of non-polio enteroviruses isolated from acute flaccid paralysis patients in Uganda. Med Virol. 2021 Jan 17. doi: 10.1002/jmv.26804. Online ahead of print. PMID: 33458840
- Martin Mbonye, Godfrey Siu & Janet Seeley (2021) Conflicted masculinities: understanding dilemmas and (re)configurations of masculinity among men in long-term relationships with female sex workers, in Kampala, Uganda, Culture, Health & Sexuality. DOI: 10.1080/13691058.2021.1891569
- Atuhairwe S, Gemzell-Danielsson K, Byamugisha J, Kaharuza F, Tumwesigye NM, Hanson C. Abortion-related nearmiss morbidity and mortality in 43 health facilities with differences in readiness to provide abortion care in Uganda. BMJ Glob Health. 2021 Feb;6(2):e003274. doi: 10.1136/bmjgh-2020-003274.PMID: 33547174
- Bagasha P, Namukwaya E, Leng M, Kalyesubula R, Mutebi E, Naitala R, Katabira E and Petrova M. Comparison of the healthrelated quality of life of end stage kidney disease patients on hemodialysis and non-hemodialysis management in Uganda. Bagasha et al. BMC Palliative Care (2021) 20:52 https://doi.org/10.1186/s12904-021-00743-0
- Kwizera R, Katende A, Bongomin F, Nakiyingi L and Bruce J. Kirenga. J Misdiagnosis of chronic pulmonary aspergillosis as pulmonary tuberculosis at a tertiary care center in Uganda: a case series. Med Case Reports (2021) 15:140 https://doi.org/10.1186/s13256-021-02721-9
- Nattoh G, Bargul JL, Magoma G, Mbaisi, L, Butungi H, Mararo E, E Teal, JK Herren (2021) The fungus Leptosphaerulina persists in Anopheles gambiae and induces melanization. PLoS ONE 16(2): e0246452. https://doi.org/10.1371/journal.pone.0246452
- D. Abera, CK Kibet, T Degefa, L Amenga‑Etego, JL Bargul, and L Golassa. Genomic analysis reveals independent evolution of Plasmodium falciparum populations in Ethiopia Malar J (2021) 20:129 https://doi.org/10.1186/s12936-021-03660-y
- Richard Kwizera, Emmanuel Mande, Denis Omali, Samuel Okurut, Sheila Nabweyambo, Rose Nabatanzi, Damalie Nakanjako and David B. Meya. Translational research in Uganda: linking basic science to bedside medicine in a resource limited setting. J Transl Med (2021) 19:76 https://doi.org/10.1186/s12967-021-02747-z
- Amongin D, Kågesten A, Tunçalp Ö, Nakafeero M, Atuyambe L, Hanson C, Benova L. Later life outcomes of women by adolescent birth history: analysis of the 2016 Uganda Demographic and Health Survey. BMJ Open 2021;11:e041545. doi:10.1136/ bmjopen-2020-041545
- Atuhairwe S, Gemzell-Danielsson K, Byamugisha J, et al. Abortion- related near-miss morbidity and mortality in 43 health facilities with differences in readiness to provide abortion care in Uganda. BMJ Global Health 2021;6:e003274. doi:10.1136/ bmjgh-2020-003274
- Milugo TK, Tchouassi DP, Kavishe RA, Dinglasan RR, Torto B. Derivatization increases mosquito larvicidal activity of the sesquiterpene lactone parthenin isolated from the invasive weed Parthenium hysterophorus. Pest Manag Sci. 2021 Feb;77(2):659-665. doi: 10.1002/ps.6131. Epub 2020 Oct 26.PMID: 33034953
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Research
Why Education System Resilience Matters: Insights from GPE Partner Countries in Africa
Published
1 week agoon
April 29, 2026
By: Roy William Mayega, Julius Ssentongo, Anthony Ssebagereka, Harriet Adong
In many parts of sub-Saharan Africa, schools do not operate in stable environments; they operate in uncertainty. A school year might begin with optimism and structure, only to be interrupted by floods, conflict, or a public health emergency. Yet across Global Partnership for Education (GPE) partner countries in Africa, something more complex is unfolding than repeated disruption. Education systems are not just reacting, they are adapting, improvising, and, in some cases, transforming.
In this blog, we share key insights from a desk review report that examined how GPE partner countries in Africa understand and operationalize education system resilience, the types of disruptions they face, and the strategies they use to sustain learning. Drawing on education policy documents and a wide range of academic and grey literature, the report offers a unique cross-country perspective on what it takes to keep education systems functioning amid constant change.
This is where education system resilience (ESR) becomes more than a technical concept. It becomes a lens for understanding how learning continues against the odds and why it sometimes does not.
Resilience looks different depending on where you stand
One of the most striking insights from the study is that there is no single, shared definition of resilience. Instead, countries interpret it through their lived realities.
In countries frequently hit by climate disasters, resilience often looks like preparedness—building safer schools, integrating disaster risk reduction into curricula, and training teachers to respond to emergencies. In places recovering from epidemics, it shows up as the ability to switch quickly to radio, print, or digital learning when classrooms close.
In conflict-affected settings, resilience takes on a different meaning altogether. It becomes deeply local. Communities step in where formal systems falter, organizing learning spaces, mobilizing volunteer teachers, and keeping education going even when the state cannot. In these contexts, resilience is less about systems “bouncing back” and more about communities holding things together.
This diversity of perspectives challenges any one-size-fits-all approach. It also raises an important question: if resilience looks different everywhere, how do we design policies that truly respond to context?
Disruption is rarely singular – it’s layered
Another key insight is that education systems are not dealing with isolated shocks, but overlapping crises.
A drought does not just damage school infrastructure; it affects livelihoods, pushes children into labour, and increases dropout rates. Conflict not only closes schools; it displaces families, strains host communities, and disrupts entire education systems across borders. Public health crises like COVID-19 expose digital divides and deepen existing inequalities.
For example, countries like Somalia, Ethiopia, Eritrea, and Djibouti face droughts and erratic rainfall, causing school closures, food insecurity, displacement, and psychosocial stress, particularly among rural and pastoral communities.
What emerges is a picture of a “polycrisis” in which climate, conflict, poverty, and health emergencies interact and reinforce one another. The result is not just a temporary interruption, but a cumulative erosion of learning outcomes, system capacity, and equity. Moreover, it is the most vulnerable learners, such as girls, children with disabilities, and those in rural or conflict-affected areas who bear the greatest burden.
If disruption is inevitable, then the real question becomes: can learning continue?
Across GPE partner countries, some of the most promising practices focus on this very challenge. During COVID-19, countries rapidly expanded distance learning through radio, television, and online platforms. While access was uneven, these efforts marked a shift toward more flexible education systems. Countries like Madagascar and the Gambia also use distance learning tools to support learning continuity in the face of adverse climatic events. But resilience is not just about technology. It is also about teachers: how prepared they are to adapt, support learners through uncertainty, and shift between teaching modalities. It is about curricula that reflect real-world risks, from climate change to conflict, and it is about planning, having contingency systems in place before a crisis hits.
In this sense, resilience is less about responding to emergencies and more about embedding flexibility into the system itself.
Communities and equity are at the heart of resilience
One of the quieter but still powerful themes emerging from the study is the role of communities.
In fragile and conflict-affected contexts, community actors, including parents, local leaders, and civil society, are often the backbone of education continuity. They manage schools, mobilize resources, and create informal systems of support when formal structures break down. In Liberia, community participation and local leadership both played a key role in restoring educational services following conflict, the Ebola outbreak, and repeated infrastructural shocks.
Even in more stable settings, community engagement strengthens accountability, supports vulnerable learners, and anchors education systems in local realities. Yet, this role is not always formally recognized or supported in policy. Bridging this gap could be key to building more grounded and sustainable resilience strategies. At the same time, it is precisely where policy recognition matters most. When communities are formally supported, as seen in Sierra Leone’s re-entry programs for pregnant girls, targeted policies can transform informal resilience into lasting systems change.
Resilience is often framed in terms of systems, policies, infrastructure, and planning. However, the study makes it clear that resilience is also about considering who gets left behind.
Gender inequality, poverty, and marginalization consistently shape who can continue learning during disruptions. Girls face increased risks of early marriage and dropout. Children from poorer households struggle with access to remote learning, while learners with disabilities are often excluded.
Sierra Leone’s approach illustrates this broader challenge, beyond re-entry programs for pregnant girls, the country has pursued targeted policies for social protection measures and inclusive education initiatives.
So why does it matter?
Without resilience, progress in education remains fragile. Years of investment in access and quality can be undone by a single crisis. In regions where disruptions are frequent, the cost of not building resilience is simply too high.
The study also offers a more hopeful perspective. Across GPE partner countries in Africa, there is clear momentum and meaningful efforts to integrate resilience into planning, invest in adaptive systems, and learn from past crises.
What is emerging is not a perfect model, but a growing body of practice. One that shows resilience is possible when it is context-driven, inclusive, and embedded across the system.
Looking ahead: from coping to transformation
If there is one takeaway from this study, it is that resilience cannot remain a reactive agenda. Too often, systems are designed to cope with the last crisis rather than prepare for the next.
Looking ahead, the challenge—and opportunity—is to shift from short-term responses to long-term transformation. This means embedding resilience into the core of education planning, not as an add-on, but as a guiding principle. It means investing not only in infrastructure and technology, but also in people, teachers, communities, and learners, who ultimately carry systems through disruption. It means prioritizing equity so that resilience efforts do not reinforce existing gaps but instead close them.
There is no single pathway to building resilient education systems. However, the experiences across GPE partner countries in Africa show that progress is possible when solutions are grounded in context, informed by evidence, and driven by collaboration.
This blog was originally published on the GPE KIX website on April 16, 2026.
Access the full report here
Research
Makerere Revives Scholarly Publishing through Journal Editors’ Workshop to Boost Global Rankings
Published
2 weeks agoon
April 24, 2026By
Mak Editor
By Moses Lutaaya
Makerere University has stepped up efforts to strengthen its scholarly publishing ecosystem following a Journal Editors’ Workshop held on April 23, 2026, in the Smart Room, College of Humanities and Social Sciences (CHUSS), aimed at improving journal quality, increasing research visibility, and enhancing the university’s global rankings.
The workshop, organized by Makerere University Press (Mak Press), brought together journal editors from colleges, schools, and institutes across the university to discuss publication standards, consistency in journal production, international indexing requirements, governance, and sustainability of academic journals.
Speaking at the event on behalf of the Deputy Vice Chancellor for Academic Affairs, Prof. Julius Kikooma, Director of Graduate Training (DGT) and Chairperson of the Technical and Quality Assurance Committee of Mak Press, said the workshop forms part of the university’s deliberate strategy to restore Makerere’s historic place as a continental hub of intellectual production.
He said Makerere had long been recognized as Africa’s leading center for scholarship, especially in the post-independence period when renowned academics and political intellectuals across the continent sought to publish their work through the university.

“Makerere was once the place where Africa’s leading scholars wanted to publish. We are now working to revive that tradition by ensuring our home-based journals meet international standards and become the first choice for our researchers,” Prof. Kikooma said.
He noted that although the university continues to produce world-class researchers, much of their best work is published outside Makerere, benefiting external institutions in rankings and global visibility.
“Management has realized that there has been a missed opportunity. The research is done here, the scholars are nurtured here, but the visibility and ranking benefits have often gone elsewhere because we lacked strong publishing outlets of our own,” he said.
Prof. Kikooma emphasized that global university rankings heavily depend on publications in indexed journals, making the strengthening of Makerere’s home-based journals critical to its ambition of becoming a truly research-led institution.

He also pointed to mindset as one of the biggest barriers. “Many academics have been inducted into believing that their best ideas are not for home consumption. We must change that mindset and build confidence in our own journals because strong societies use their own research outputs to solve real problems,” he added.
He further encouraged journal editors to make publications more responsive to society by introducing special issues that address pressing national and regional challenges.
Prof. William Tayeebwa, the Chief Managing Editor of Makerere University Press, said the workshop was intended to assess the progress of journals across colleges while equipping editors with the tools needed to meet international publishing standards.
“Our main goal was to engage editors on whether they are producing journals consistently. If they say they are biannual, are they really publishing twice a year? If not, they need to make realistic decisions and strengthen their workflow,” he said.

He explained that the workshop brought together editors from established journals, newly formed journals, and colleges that are yet to establish journals.
Prof. Tayeebwa revealed that one of the major gaps identified was that some colleges still do not have academic journals.
“Why would an entire college not have a journal? That was one of the major concerns. We are engaging prolific scholars in those colleges to understand what is holding them back,” he said.
He also noted that many journal editors were depending on Mak Press for support that should ordinarily come from their colleges, prompting the need for stronger institutional buy-in and sustainability mechanisms.
Mak Press, he said, is helping journals secure International Standard Serial Numbers (ISSN), assign Digital Object Identifiers (DOIs), and prepare for international indexing.

He described ISSN as a critical identifier for journals. “If a journal does not have an ISSN, it cannot be discovered online and may not even be recognized by quality assurance systems. It is like a vehicle without a registration number plate,” he explained.
Prof. Tayeebwa said while research quality at Makerere is already strong, the university must significantly improve publication output.
“For a university of this size, publishing only a few dozen articles annually is not enough. With over 600 PhD students, master’s students, and staff, Makerere should be producing more than 1,000 journal articles every year,” he said.
He also called for stronger support for graduate students to co-publish with supervisors, noting that publication is already a graduation requirement for PhD students.
The Director, Institute of Gender and Development Studies Prof. Ruth Nsibirano, said the workshop demonstrates the university’s commitment to ensuring that knowledge generated at Makerere reaches the global academic community.
Her institute is currently developing the Makerere Gender and Development Journal, with its inaugural issue expected in early 2027.

“We do not believe the Global South should remain only consumers of knowledge. We have a lot of knowledge to generate and share with the world,” Prof. Nsibirano said.
She explained that the journal will focus on gender, social transformation, and development while providing a platform for research that reflects African realities and perspectives.
According to Prof. Nsibirano, the workshop also promotes collaboration among scholars across disciplines.
“It improves the way we interact as scholars. We can co-publish, co-author, and also know what is being published in other journals under Makerere Press. That strengthens research and institutional visibility,” she said.
She added that the main challenge affecting many journals had not necessarily been structural gaps, but reduced motivation, which caused some long-established journals to become dormant.
With renewed management support, stronger editorial coordination, and a push for international standards, Makerere University leaders believe the institution’s journals can once again become leading platforms for African scholarship and significantly contribute to the university’s competitiveness on the global stage.
Research
Call for two PhD Positions under the Global Health EDCTP3 Joint Undertaking funded Digital Dashboards in Diagnostic Innovations (DiDiDi) Project
Published
2 weeks agoon
April 23, 2026By
Mak Editor
Institutions
Leiden University Medical Center (LUMC), The Netherlands, The University of Glasgow, Scotland, UK, Makerere University (Mak), College of Veterinary Medicine, Animal Resources and Biosecurity (COVAB) and College of Computing and Information Science Kampala, Uganda.
Makerere University (Mak) in collaboration with The Leiden University Medical Center (LUMC) and The University of Glasgow, Scotland, UK invites applications for two PhD positions. The PhD position is under our four (4) year (2026-2030) funded project by Global Health EDCTP3 Joint Undertaking and implemented through EU Funding & Tenders Portal under project name: Digital Dashboards in Diagnostic Innovations (DiDiDi) involving 16 research partner institutions from 6 countries, including LUMC, The University of Glasgow and Makerere University.
Project background
Digital Dashboards in Diagnostic Innovations (DiDiDi) focuses on developing secure digital dashboards to understand disease prevalence and to target new interventions for the treatment of these poverty related helminth infections. Schistosomiasis and soil‑transmitted helminth infections remain major public health challenges in Uganda and other endemic regions. Accurate and scalable diagnostic tools are essential for targeted treatment, monitoring of control programs, and progress towards elimination. The project has a specific focus on government and regional health surveillance systems, meteorological data collection and predictive models.
PhD Positions
PhD Position 1: Field-evaluation of diagnostic innovations for schistosomiasis and Soil‑Transmitted Helminth infections in Uganda
Within the DiDiDi consortium, this PhD project specifically contributes high‑quality field and clinical validation data to support the development and evaluation of digital diagnostic dashboards. The goal for the PhD is to collect and analyse clinical and field data in Uganda and to validate conventional diagnostic approaches against innovative digital diagnostics and environmental risk factors. The work will contribute to a better understanding of infection dynamics and to the development of improved diagnostic and surveillance strategies in endemic settings in low‑ and middle‑income countries (LMICs) to conduct doctoral research on the diagnosis of schistosomiasis and soil‑transmitted helminth (STH) infections in endemic settings.
PhD Position 2: Developing Machine Learning for Microscope Decision Support for Schistosomiasis and Soil‑Transmitted Helminth infections in Uganda
Within the DiDiDi consortium, this PhD project specifically contributes high‑quality field and clinical validation data to support the development and evaluation of digital diagnostic dashboards. As part of this programme, we are further developing low-cost automated microscopy that can be readily deployed in community settings. The goal for the PhD is to develop computationally low-resource mobile phone-based machine learning and AI algorithms to analyse field data. The work will involve the opportunity to collaborate with industrial partnerships based in Uganda and Europe. The overall aim of the project will be to contribute to a better understanding of infection dynamics and the development of improved diagnostic and surveillance strategies in endemic settings in low‑ and middle‑income countries (LMICs).
Application Process
Interested candidates should submit:
- A motivation letter describing research interests and suitability for the project;
- Curriculum vitae.
- Only apply for one PhD track
Following a first selection round, potential candidates will be asked for:
- Copies of academic transcripts and degree certificates;
- Names and contact details of at least two academic referees.
A first round of interviews is likely to take place in Kampala on May 17th or 18th.
Submission Process
Submit your application to the project contact person at Makerere University, Associate Professor Lawrence Mugisha via email: mugishalaw@gmail.com not later than 7th May, 2026. For PhD 1, copy in E.A.van_Lieshout@lumc.nl while for PhD 2 copy in jon.cooper@glasgow.ac.uk
Only shortlisted candidates will be notified for the 1st phase of the interview.
See below for detailed advert
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